4GQB Transferase Protein Binding date Aug 22, 2012
title Crystal Structure Of The Human Prmt5:Mep50 Complex
authors S.Antonysamy, Z.Bonday, R.Campbell, B.Doyle, Z.Druzina, T.Gheyi, B L.N.Jungheim, Y.Qian, C.Rauch, M.Russell, J.M.Sauder, S.R.Wasser K.Weichert, F.S.Willard, A.Zhang, S.Emtage
compound source
Molecule: Protein Arginine N-Methyltransferase 5
Chain: A
Synonym: 72 Kda Icln-Binding Protein, Histone-Arginine N- Methyltransferase Prmt5, Jak-Binding Protein 1, Shk1 Kinase Protein 1 Homolog, Skb1 Homolog, Skb1hs, Protein Arginine N Methyltransferase 5, N-Terminally Processed;
Ec: 2.1.1.-, 2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Methylosome Protein 50
Chain: B
Synonym: Mep-50, Androgen Receptor Cofactor P44, Wd Repeat- Protein 77, P44mep50;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr77, Mep50, Hkmt1069, Nbla10071
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Histone H4 Peptide
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 2 2 2
R_factor 0.188 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.981 138.762 178.472 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand 0XU, ACE enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...
  • protein-arginine omega-N sym...


  • B
  • ligand-dependent nuclear rec...


  • C


    Primary referenceCrystal structure of the human PRMT5:MEP50 complex., Antonysamy S, Bonday Z, Campbell RM, Doyle B, Druzina Z, Gheyi T, Han B, Jungheim LN, Qian Y, Rauch C, Russell M, Sauder JM, Wasserman SR, Weichert K, Willard FS, Zhang A, Emtage S, Proc Natl Acad Sci U S A. 2012 Oct 15. PMID:23071334
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (4gqb.pdb1.gz) 1226 Kb
  • LPC: Ligand-Protein Contacts for 4GQB
  • CSU: Contacts of Structural Units for 4GQB
  • Structure Factors (593 Kb)
  • Retrieve 4GQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GQB from S2C, [Save to disk]
  • Re-refined 4gqb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GQB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GQB, from MSDmotif at EBI
  • Fold representative 4gqb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gqb_B] [4gqb_A] [4gqb] [4gqb_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GQB: [WD40 ] by SMART
  • Other resources with information on 4GQB
  • Community annotation for 4GQB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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