4GT4 Transferase date Aug 28, 2012
title Structure Of Unliganded, Inactive Ror2 Kinase Domain
authors J.M.Mendrola, M.A.Lemmon
compound source
Molecule: Tyrosine-Protein Kinase Transmembrane Receptor Ro
Chain: A, B
Fragment: Tyrosine Kinase Domain (Unp Residues 452-753)
Synonym: Neurotrophic Tyrosine Kinase, Receptor-Related 2
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ntrkr2, Ror2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: C 2 2 21
R_factor 0.177 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.834 112.918 114.759 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.41 Å
ligand NO3 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAssessing the range of kinase autoinhibition mechanisms in the insulin receptor family., Artim SC, Mendrola JM, Lemmon MA, Biochem J. 2012 Sep 20. PMID:22992069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (4gt4.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (4gt4.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4GT4
  • CSU: Contacts of Structural Units for 4GT4
  • Structure Factors (431 Kb)
  • Retrieve 4GT4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GT4 from S2C, [Save to disk]
  • Re-refined 4gt4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GT4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GT4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GT4, from MSDmotif at EBI
  • Fold representative 4gt4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gt4_B] [4gt4] [4gt4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GT4: [TyrKc ] by SMART
  • Other resources with information on 4GT4
  • Community annotation for 4GT4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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