4GT5 Transferase date Aug 28, 2012
title Crystal Structure Of The Inactive Trka Kinase Domain
authors S.C.Artim, M.A.Lemmon
compound source
Molecule: High Affinity Nerve Growth Factor Receptor
Chain: A
Fragment: Receptor Tyrosine Kinase (Unp Residues 498-796)
Synonym: Neurotrophic Tyrosine Kinase Receptor Type 1, Trk1 Transforming Tyrosine Kinase Protein, Tropomyosin-Related K Tyrosine Kinase Receptor, Tyrosine Kinase Receptor A, Trk-A Gp140trk, P140-Trka;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtc, Ntrk1, Trk, Trka
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: H 3 2
R_factor 0.202 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.033 105.033 203.316 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAssessing the range of kinase autoinhibition mechanisms in the insulin receptor family., Artim SC, Mendrola JM, Lemmon MA, Biochem J. 2012 Sep 20. PMID:22992069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4gt5.pdb1.gz) 99 Kb
  • CSU: Contacts of Structural Units for 4GT5
  • Structure Factors (229 Kb)
  • Retrieve 4GT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GT5 from S2C, [Save to disk]
  • Re-refined 4gt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GT5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GT5, from MSDmotif at EBI
  • Fold representative 4gt5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gt5] [4gt5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GT5: [TyrKc ] by SMART
  • Other resources with information on 4GT5
  • Community annotation for 4GT5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science