4GTW Crystal structure of mouse Enpp1 in complex with AMP date
authors Kato, K., Nishimasu, H., Ishitani, R., Nureki, O.
compound source
symmetry
R_factor
R_Free 0.2764
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand AMP, BMA, CA, MAN, MSE, NAG, ZN enzyme
Gene MCG
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling., Kato K, Nishimasu H, Okudaira S, Mihara E, Ishitani R, Takagi J, Aoki J, Nureki O, Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):16876-81. doi:, 10.1073/pnas.1208017109. Epub 2012 Oct 1. PMID:23027977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (469 Kb) [Save to disk]
  • Biological Unit Coordinates (4gtw.pdb1.gz) 233 Kb
  • Biological Unit Coordinates (4gtw.pdb2.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 4GTW
  • CSU: Contacts of Structural Units for 4GTW
  • Structure Factors (639 Kb)
  • Retrieve 4GTW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GTW from S2C, [Save to disk]
  • Re-refined 4gtw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GTW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GTW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GTW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gtw_A] [4gtw_B] [4gtw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GTW: [Endonuclease_NS] [NUC] [SO ] by SMART
  • Other resources with information on 4GTW
  • Community annotation for 4GTW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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