4GV1 PKB alpha in complex with AZD5363 date
authors Addie, M., Ballard, P., Bird, G., Buttar, D., Currie, G., Davies, B., Debreczeni, J., Dry, H., Dudley, P., Greenwood, R., Hatter, G., Jestel, A., Johnson, P.D., Kettle, J.G., Lane, C., Lamont, G., Leach, A., Luke, R.W.A., Ogilvie, D., Page, K., Pass, M., Steinbacher, S., Steuber, H., Pearson, S., Ruston, L.
compound source
symmetry
R_factor
R_Free 0.20978
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.49
ligand 0XZ, GOL, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 4-amino-N-[(1S)-1-(4-chlorophenyl)-3-hydroxypropyl]-1-(7H-pyrrolo[2,3-d]pyrimidin -4-yl)piperidine-4-carboxamide (AZD5363), an orally bioavailable, potent inhibitor of Akt kinases., Addie M, Ballard P, Buttar D, Crafter C, Currie GS, Davies BR, Debreczeni J, Dry H, Dudley P, Greenwood R, Johnson PD, Kettle JG, Lane C, Lamont G, Leach AG, Luke R, Morris J, Ogilvie D, Page K, Pass M, Pearson S, Ruston L, J Med Chem. 2013 Feb 11. PMID:23394218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (4gv1.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4GV1
  • CSU: Contacts of Structural Units for 4GV1
  • Structure Factors (493 Kb)
  • Retrieve 4GV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GV1 from S2C, [Save to disk]
  • Re-refined 4gv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GV1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GV1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gv1_A] [4gv1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GV1: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 4GV1
  • Community annotation for 4GV1 at PDBWiki (http://pdbwiki.org)

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