4GVC	Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with phosphorylated Syndecan1 Peptide	date	2012-08-30
authors	Liu, X., Shepherd, T.R., Murray, A.M., Xu, Z., Fuentes, E.J.
compound		source
symmetry		R_factor R_Free 0.19964
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.54
ligand	ANS, CL, NA, PTR	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics., Liu X, Shepherd TR, Murray AM, Xu Z, Fuentes EJ, Structure. 2013 Mar 5;21(3):342-54. doi: 10.1016/j.str.2013.01.004. Epub 2013 Feb, 7. PMID:23395182

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (4gvc.pdb1.gz) 34 Kb LPC: Ligand-Protein Contacts for 4GVC CSU: Contacts of Structural Units for 4GVC Structure Factors (445 Kb) Retrieve 4GVC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GVC from S2C, [Save to disk] Re-refined 4gvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GVC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GVC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GVC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gvc] [4gvc_A] [4gvc_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4GVC: [PDZ ] by SMART

Other resources with information on 4GVC

Community annotation for 4GVC at PDBWiki (http://pdbwiki.org)

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