4GVP Crystal Structure of the Response Regulator Protein VraR from Staphylococcus aureus date 2012-08-31
authors Leonard, P.G., Stock, A.M.
compound source
symmetry
R_factor
R_Free 0.2289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.03
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referencePhosphorylation-dependent conformational changes and domain rearrangements in Staphylococcus aureus VraR activation., Leonard PG, Golemi-Kotra D, Stock AM, Proc Natl Acad Sci U S A. 2013 May 21;110(21):8525-30. doi:, 10.1073/pnas.1302819110. Epub 2013 May 6. PMID:23650349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk]
  • Biological Unit Coordinates (4gvp.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (4gvp.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (4gvp.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (4gvp.pdb4.gz) 72 Kb
  • CSU: Contacts of Structural Units for 4GVP
  • Structure Factors (852 Kb)
  • Retrieve 4GVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GVP from S2C, [Save to disk]
  • Re-refined 4gvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GVP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GVP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gvp] [4gvp_A] [4gvp_B] [4gvp_D] [4gvp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GVP: [HTH_LUXR] [REC ] by SMART
    • Other resources with information on 4GVP
  • Community annotation for 4GVP at PDBWiki (http://pdbwiki.org)

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