4GWK	Crystal structure of 6-phosphogluconate dehydrogenase complexed with 3-phosphoglyceric acid	date	2012-09-03
authors	He, C., Zhou, L., Zhang, L.
compound		source
symmetry		R_factor R_Free 0.1745
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.53
ligand	3PG, MES	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Phosphoglycerate mutase 1 coordinates glycolysis and biosynthesis to promote tumor growth., Hitosugi T, Zhou L, Elf S, Fan J, Kang HB, Seo JH, Shan C, Dai Q, Zhang L, Xie J, Gu TL, Jin P, Aleckovic M, Leroy G, Kang Y, Sudderth JA, Deberardinis RJ, Luan CH, Chen GZ, Muller S, Shin DM, Owonikoko TK, Lonial S, Arellano ML, Khoury HJ, Khuri FR, Lee BH, Ye K, Boggon TJ, Kang S, He C, Chen J, Cancer Cell. 2012 Nov 13;22(5):585-600. doi: 10.1016/j.ccr.2012.09.020. PMID:23153533

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (4gwk.pdb1.gz) 82 Kb Biological Unit Coordinates (4gwk.pdb2.gz) 162 Kb LPC: Ligand-Protein Contacts for 4GWK CSU: Contacts of Structural Units for 4GWK Structure Factors (2482 Kb) Retrieve 4GWK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GWK from S2C, [Save to disk] Re-refined 4gwk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GWK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GWK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GWK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gwk_A] [4gwk] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4GWK: [6PGD ] by SMART

Other resources with information on 4GWK

Community annotation for 4GWK at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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