4GXB Structure of the SNX17 atypical FERM domain bound to the NPxY motif of P-selectin date 2012-09-04
authors Ghai, R., Bugarcic, A., Liu, H., Norwood, S.J., Li, S.S., Teasdale, R.D., Collins, B.M.
compound source
symmetry
R_factor
R_Free 0.2038
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins., Ghai R, Bugarcic A, Liu H, Norwood SJ, Skeldal S, Coulson EJ, Li SS, Teasdale RD, Collins BM, Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):E643-52. doi:, 10.1073/pnas.1216229110. Epub 2013 Feb 4. PMID:23382219
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4gxb.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4GXB
  • CSU: Contacts of Structural Units for 4GXB
  • Structure Factors (524 Kb)
  • Retrieve 4GXB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GXB from S2C, [Save to disk]
  • Re-refined 4gxb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GXB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GXB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GXB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gxb_B] [4gxb] [4gxb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GXB: [B41 ] by SMART
    • Other resources with information on 4GXB
  • Community annotation for 4GXB at PDBWiki (http://pdbwiki.org)

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