4GXU	Crystal structure of antibody 1F1 bound to the 1918 influenza hemagglutinin	date
authors	Ekiert, D.C., Wilson, I.A.
compound		source
symmetry		R_factor R_Free 0.2547
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.29
ligand	BMA, NAG, PCA	enzyme
Gene Ontology	Chain Function Process Component A, K, E, C, I, G F, J, B, H, D, L
Primary reference	Influenza Human Monoclonal Antibody 1F1 Interacts with Three Major Antigenic Sites and Residues Mediating Human Receptor Specificity in H1N1 Viruses., Tsibane T, Ekiert DC, Krause JC, Martinez O, Crowe JE Jr, Wilson IA, Basler CF, PLoS Pathog. 2012 Dec;8(12):e1003067. doi: 10.1371/journal.ppat.1003067. Epub, 2012 Dec 6. PMID:23236279

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1649 Kb) [Save to disk] Biological Unit Coordinates (4gxu.pdb1.gz) 881 Kb Biological Unit Coordinates (4gxu.pdb2.gz) 762 Kb LPC: Ligand-Protein Contacts for 4GXU CSU: Contacts of Structural Units for 4GXU Structure Factors (1611 Kb) Retrieve 4GXU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GXU from S2C, [Save to disk] Re-refined 4gxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GXU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GXU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GXU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gxu_W] [4gxu_O] [4gxu_R] [4gxu_P] [4gxu_K] [4gxu_X] [4gxu_D] [4gxu_G] [4gxu] [4gxu_A] [4gxu_N] [4gxu_B] [4gxu_L] [4gxu_E] [4gxu_M] [4gxu_Q] [4gxu_V] [4gxu_U] [4gxu_T] [4gxu_F] [4gxu_C] [4gxu_J] [4gxu_I] [4gxu_S] [4gxu_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4GXU: [IG_like] [IGv ] by SMART

Other resources with information on 4GXU

Community annotation for 4GXU at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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