OCA Atlas for 4GY5

4GY5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

M3L, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, E

Primary reference

Structural insight into coordinated recognition of trimethylated histone H3 lysine 9 (H3K9me3) by the plant homeodomain (PHD) and tandem tudor domain (TTD) of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) protein., Cheng J, Yang Y, Fang J, Xiao J, Zhu T, Chen F, Wang P, Li Z, Yang H, Xu Y, J Biol Chem. 2013 Jan 11;288(2):1329-39. doi: 10.1074/jbc.M112.415398. Epub 2012 , Nov 16. PMID:23161542

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]

Biological Unit Coordinates (4gy5.pdb1.gz) 39 Kb

Biological Unit Coordinates (4gy5.pdb2.gz) 38 Kb

Biological Unit Coordinates (4gy5.pdb3.gz) 28 Kb

Biological Unit Coordinates (4gy5.pdb4.gz) 27 Kb

LPC: Ligand-Protein Contacts for 4GY5

CSU: Contacts of Structural Units for 4GY5

Structure Factors (373 Kb)

Retrieve 4GY5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4GY5 from S2C, [Save to disk]

Re-refined 4gy5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GY5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gy5] [4gy5_A] [4gy5_B] [4gy5_C] [4gy5_D] [4gy5_E] [4gy5_F]

SWISS-PROT database:

Domains found in 4GY5: [PHD] [RING ] by SMART

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