4GZ2 Mus Musculus Tdp2 excluded ssDNA complex date
authors Schellenberg, M.J., Williams, R.S.
compound source
symmetry
R_factor
R_Free 0.2454
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand FMT, MG enzyme
Primary referenceMechanism of repair of 5'-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2., Schellenberg MJ, Appel CD, Adhikari S, Robertson PD, Ramsden DA, Williams RS, Nat Struct Mol Biol. 2012 Oct 28. doi: 10.1038/nsmb.2418. PMID:23104055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4gz2.pdb1.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 4GZ2
  • CSU: Contacts of Structural Units for 4GZ2
  • Structure Factors (353 Kb)
  • Retrieve 4GZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GZ2 from S2C, [Save to disk]
  • Re-refined 4gz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GZ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GZ2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gz2_A] [4gz2_C] [4gz2_D] [4gz2_B] [4gz2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GZ2
  • Community annotation for 4GZ2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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