4GZ8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, BMA, CA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceNeuropilins lock secreted semaphorins onto plexins in a ternary signaling complex., Janssen BJ, Malinauskas T, Weir GA, Cader MZ, Siebold C, Jones EY, Nat Struct Mol Biol. 2012 Dec;19(12):1293-9. doi: 10.1038/nsmb.2416. Epub 2012, Oct 28. PMID:23104057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (4gz8.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 4GZ8
  • CSU: Contacts of Structural Units for 4GZ8
  • Structure Factors (1448 Kb)
  • Retrieve 4GZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GZ8 from S2C, [Save to disk]
  • Re-refined 4gz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gz8] [4gz8_A] [4gz8_B]
  • SWISS-PROT database:
  • Domains found in 4GZ8: [PSI] [Sema ] by SMART

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