4GZZ Crystal structures of bacterial RNA Polymerase paused elongation complexes date
authors Weixlbaumer, A., Leon, K., Landick, R., Darst, S.A.
compound source
symmetry
R_factor
R_Free 0.2849
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.29
ligand MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


Primary referenceStructural basis of transcriptional pausing in bacteria., Weixlbaumer A, Leon K, Landick R, Darst SA, Cell. 2013 Jan 31;152(3):431-41. doi: 10.1016/j.cell.2012.12.020. PMID:23374340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1050 Kb) [Save to disk]
  • Biological Unit Coordinates (4gzz.pdb1.gz) 1040 Kb
  • LPC: Ligand-Protein Contacts for 4GZZ
  • CSU: Contacts of Structural Units for 4GZZ
  • Structure Factors (326 Kb)
  • Retrieve 4GZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GZZ from S2C, [Save to disk]
  • Re-refined 4gzz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GZZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GZZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gzz] [4gzz_B] [4gzz_D] [4gzz_E] [4gzz_T] [4gzz_C] [4gzz_R] [4gzz_A] [4gzz_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GZZ: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
    • Other resources with information on 4GZZ
  • Community annotation for 4GZZ at PDBWiki (http://pdbwiki.org)

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