4H36 Transferase date Sep 13, 2012
title Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
authors J.C.Nwachukwu, J.D.Laughlin, M.Figuera-Losada, L.Cherry, K.W.Net P.V.Lograsso
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Catalytic Domain (Unp Residues 45-400)
Synonym: Map Kinase 10, Mapk 10, Map Kinase P49 3f12, Stres Activated Protein Kinase 1b, Sapk1b, Stress-Activated Prote Jnk3, C-Jun N-Terminal Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnk3, Jnk3a, Mapk10, Prkm10, Sapk1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cyclic Amp-Dependent Transcription Factor Atf-2
Chain: B
Fragment: Unp Residues 48-55
Synonym: Camp-Dependent Transcription Factor Atf-2, Activat Transcription Factor 2, Cyclic Amp-Responsive Element-Bindi 2, Creb-2, Camp-Responsive Element-Binding Protein 2, Hb16, Response Element-Binding Protein Cre-Bp1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atf2, Creb2, Crebp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.580 84.580 127.060 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Mechanisms of Allostery and Autoinhibition in JNK Family Kinases., Laughlin JD, Nwachukwu JC, Figuera-Losada M, Cherry L, Nettles KW, Lograsso PV, Structure. 2012 Nov 6. pii: S0969-2126(12)00374-7. doi:, 10.1016/j.str.2012.09.021. PMID:23142346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (4h36.pdb1.gz) 118 Kb
  • CSU: Contacts of Structural Units for 4H36
  • Structure Factors (86 Kb)
  • Retrieve 4H36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H36 from S2C, [Save to disk]
  • Re-refined 4h36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H36
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4H36, from MSDmotif at EBI
  • Fold representative 4h36 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h36] [4h36_A] [4h36_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4H36: [S_TKc ] by SMART
  • Other resources with information on 4H36
  • Community annotation for 4H36 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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