4H3D 1.95 Angstrom Crystal Structure of of Type I 3-Dehydroquinate Dehydratase (aroD) from Clostridium difficile with Covalent Modified Comenic Acid. date
authors Minasov, G., Light, S.H., Shuvalova, L., Duban, M.E., Dubrovska, I., Winsor, J., Papazisi, L., Anderson, W.F., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound source
symmetry
R_factor
R_Free 0.19936
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand ACT, PEG, PGE, SHL enzyme
Gene CD630
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk]
  • Biological Unit Coordinates (4h3d.pdb1.gz) 189 Kb
  • Biological Unit Coordinates (4h3d.pdb2.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 4H3D
  • CSU: Contacts of Structural Units for 4H3D
  • Structure Factors (1043 Kb)
  • Retrieve 4H3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H3D from S2C, [Save to disk]
  • Re-refined 4h3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H3D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H3D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h3d_A] [4h3d_C] [4h3d_D] [4h3d] [4h3d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4H3D
  • Community annotation for 4H3D at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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