4H3F Structure of BACE Bound to 3-(5-((7aR)-2-imino-6-(6-methoxypyridin-2-yl)-3-methyl-4-oxooctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-3-yl)benzonitrile date 2012-09-13
authors Strickland, C., Mandal, M.
compound source
symmetry
R_factor
R_Free 0.2300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 10O, TLA BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation., Mandal M, Zhu Z, Cumming JN, Liu X, Strickland C, Mazzola RD, Caldwell JP, Leach P, Grzelak M, Hyde L, Zhang Q, Terracina G, Zhang L, Chen X, Kuvelkar R, Kennedy ME, Favreau L, Cox K, Orth P, Buevich A, Voigt J, Wang H, Kazakevich I, McKittrick BA, Greenlee W, Parker EM, Stamford AW, J Med Chem. 2012 Oct 1. PMID:22989333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (4h3f.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (4h3f.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4H3F
  • CSU: Contacts of Structural Units for 4H3F
  • Structure Factors (1825 Kb)
  • Retrieve 4H3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H3F from S2C, [Save to disk]
  • Re-refined 4h3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H3F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H3F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h3f_A] [4h3f_B] [4h3f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4H3F
  • Community annotation for 4H3F at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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