4H75 Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide date 2012-09-20
authors Yang, N., Wang, W., Wang, Y., Wang, M., Zhao, Q., Rao, Z., Zhu, B., Xu, R.M.
compound source
symmetry
R_factor
R_Free 0.2183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GOL, M3L, NHE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDistinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1., Yang N, Wang W, Wang Y, Wang M, Zhao Q, Rao Z, Zhu B, Xu RM, Proc Natl Acad Sci U S A. 2012 Oct 17. PMID:23077255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4h75.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 4H75
  • CSU: Contacts of Structural Units for 4H75
  • Structure Factors (243 Kb)
  • Retrieve 4H75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H75 from S2C, [Save to disk]
  • Re-refined 4h75 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H75
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H75, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h75_B] [4h75] [4h75_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4H75
  • Community annotation for 4H75 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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