4H8S Signaling Protein date Sep 23, 2012
title Crystal Structure Of Human Appl2barph Domain
authors J.L.Martin, G.J.King
compound source
Molecule: Dcc-Interacting Protein 13-Beta
Chain: A, B, C, D
Fragment: Unp Residues 2-384
Synonym: Appl2barph, Dip13-Beta, Adapter Protein Containing Domain, Ptb Domain And Leucine Zipper Motif 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Appl2, Dip13b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.256
length a length b length c angle alpha angle beta angle gamma
97.960 208.013 218.359 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
Primary referenceMembrane-curvature protein exhibits interdomain flexibility and binds a small GTPase., King GJ, Stoeckli J, Hu SH, Winnen B, Duprez WG, Meoli CC, Junutula JR, Jarrott RJ, James DE, Whitten AE, Martin JL, J Biol Chem. 2012 Oct 10. PMID:23055524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (765 Kb) [Save to disk]
  • Biological Unit Coordinates (4h8s.pdb1.gz) 379 Kb
  • Biological Unit Coordinates (4h8s.pdb2.gz) 381 Kb
  • CSU: Contacts of Structural Units for 4H8S
  • Structure Factors (742 Kb)
  • Retrieve 4H8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H8S from S2C, [Save to disk]
  • Re-refined 4h8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H8S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4H8S, from MSDmotif at EBI
  • Fold representative 4h8s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h8s_B] [4h8s_D] [4h8s_A] [4h8s] [4h8s_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4H8S: [PH ] by SMART
  • Other resources with information on 4H8S
  • Community annotation for 4H8S at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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