4H8W Crystal structure of non-neutralizing and ADCC-potent antibody N5-i5 in complex with HIV-1 clade A/E gp120 and sCD4. date
authors Tolbert, W.D., Acharya, P., Kwong, P.D., Pazgier, M.
compound source
symmetry
R_factor
R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand GOL, MRD, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


G


Primary referenceStructural Definition of an Antibody-Dependent Cellular Cytotoxicity (ADCC) Response Implicated in Reduced Risk for HIV-1 Infection., Acharya P, Tolbert WD, Gohain N, Wu X, Yu L, Liu T, Huang W, Huang CC, Do Kwon Y, Louder RK, Luongo TS, McLellan JS, Pancera M, Yang Y, Zhang B, Flinko R, Foulke JS Jr, Sajadi MM, Kamin-Lewis R, Robinson JE, Martin L, Kwong PD, Guan Y, DeVico AL, Lewis GK, Pazgier M, J Virol. 2014 Aug 27. pii: JVI.02194-14. PMID:25165110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (4h8w.pdb1.gz) 313 Kb
  • LPC: Ligand-Protein Contacts for 4H8W
  • CSU: Contacts of Structural Units for 4H8W
  • Structure Factors (2390 Kb)
  • Retrieve 4H8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H8W from S2C, [Save to disk]
  • Re-refined 4h8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H8W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H8W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h8w_C] [4h8w_L] [4h8w_G] [4h8w] [4h8w_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4H8W: [IG_like] [IGv ] by SMART
    • Other resources with information on 4H8W
  • Community annotation for 4H8W at PDBWiki (http://pdbwiki.org)

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