4H9N Dna Binding Protein Apoptosis date Sep 24, 2012
title Complex Structure 1 Of Daxxh3.3(Sub5)H4
authors S.J.Elsasser, H.Huang, P.W.Lewis, J.W.Chin, D.C.Allis, D.J.Patel
compound source
Molecule: Histone H3.3
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3f3a, H3.3a, H3f3, Pp781, H3f3b, H3.3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Death Domain-Associated Protein 6
Chain: C
Fragment: Unp Residues 178-389
Synonym: Daxx, Hdaxx, Ets1-Associated Protein 1, Eap1, Fas Domain-Associated Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Daxx, Bing2, Dap6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.189 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.460 107.460 90.478 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (4h9n.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4H9N
  • CSU: Contacts of Structural Units for 4H9N
  • Structure Factors (615 Kb)
  • Retrieve 4H9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H9N from S2C, [Save to disk]
  • Re-refined 4h9n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H9N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4H9N, from MSDmotif at EBI
  • Fold representative 4h9n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h9n_C] [4h9n_A] [4h9n_B] [4h9n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4H9N: [H3] [H4 ] by SMART
  • Other resources with information on 4H9N
  • Community annotation for 4H9N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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