4H9P Dna Binding Protein Apoptosis date Sep 24, 2012
title Complex Structure 3 Of Daxxh3.3(Sub5,G90a)H4
authors S.J.Elsasser, H.Huang, P.W.Lewis, J.W.Chin, D.C.Allis, D.J.Patel
compound source
Molecule: Histone H3.3
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3f3a, H3.3a, H3f3, Pp781, H3f3b, H3.3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Death Domain-Associated Protein 6
Chain: C
Fragment: Unp Residues 178-389
Synonym: Daxx, Hdaxx, Ets1-Associated Protein 1, Eap1, Fas Domain-Associated Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Daxx, Bing2, Dap6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.187 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.715 107.715 90.776 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (4h9p.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (4h9p.pdb2.gz) 267 Kb
  • LPC: Ligand-Protein Contacts for 4H9P
  • CSU: Contacts of Structural Units for 4H9P
  • Structure Factors (312 Kb)
  • Retrieve 4H9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H9P from S2C, [Save to disk]
  • Re-refined 4h9p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H9P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4H9P, from MSDmotif at EBI
  • Fold representative 4h9p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h9p_A] [4h9p_C] [4h9p] [4h9p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 4H9P with the sequences similar proteins can be viewed for 4H9P's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4H9P
  • Community annotation for 4H9P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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