4HA4	Structure of beta-glycosidase from Acidilobus saccharovorans in complex with glycerol	date	2012-09-25
authors	Trofimov, A.A., Polyakov, K.M., Tikhonov, A.V., Bezsudnova, E.Y., Dorovatovskii, P.V., Gumerov, V.M., Ravin, N.V., Skryabin, K.G., Popov, V.O.
compound		source
symmetry		R_factor R_Free 0.16333
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.37
ligand	GOL, NA, PG4, PG6, SIN	enzyme
Gene	ASAC
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol., Trofimov AA, Polyakov KM, Tikhonov AV, Bezsudnova EY, Dorovatovskii PV, Gumerov VM, Ravin NV, Skryabin KG, Popov VO, Dokl Biochem Biophys. 2013 Mar-Apr;449:99-101. doi: 10.1134/S1607672913020129., Epub 2013 May 9. PMID:23657657

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk] Biological Unit Coordinates (4ha4.pdb1.gz) 727 Kb LPC: Ligand-Protein Contacts for 4HA4 CSU: Contacts of Structural Units for 4HA4 Structure Factors (1618 Kb) Retrieve 4HA4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4HA4 from S2C, [Save to disk] Re-refined 4ha4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4HA4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4HA4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4HA4, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f4ha4, region A:731-1023 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ha4] [4ha4_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4HA4

Community annotation for 4HA4 at PDBWiki (http://pdbwiki.org)

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