4HAG Crystal structure of fc-fragment of human IgG2 antibody (centered crystal form) date 2012-09-26
authors Teplyakov, A., Malia, T., Obmolova, G., Zhao, Y., Gilliland, G.
compound source
symmetry
R_factor
R_Free 0.34930
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand BMA, MAN, NAG enzyme
Primary referenceIgG2 Fc structure and the dynamic features of the IgG CH2-CH3 interface., Teplyakov A, Zhao Y, Malia TJ, Obmolova G, Gilliland GL, Mol Immunol. 2013 Nov;56(1-2):131-9. doi: 10.1016/j.molimm.2013.03.018. Epub 2013, Apr 28. PMID:23628091
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4hag.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4HAG
  • CSU: Contacts of Structural Units for 4HAG
  • Structure Factors (32 Kb)
  • Retrieve 4HAG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HAG from S2C, [Save to disk]
  • Re-refined 4hag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HAG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HAG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HAG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hag] [4hag_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HAG: [IG_like] [IGc1 ] by SMART
    • Other resources with information on 4HAG
  • Community annotation for 4HAG at PDBWiki (http://pdbwiki.org)

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