4HBD Protein Binding date Sep 27, 2012
title Crystal Structure Of Kank2 Ankyrin Repeats
authors C.Xu, W.Tempel, T.Cerovina, M.El Bakkouri, C.Bountra, C.H.Arrowsm A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Kn Motif And Ankyrin Repeat Domain-Containing Pro
Chain: A
Fragment: Unp Residues 578-832
Synonym: Ankyrin Repeat Domain-Containing Protein 25, Matri Remodeling-Associated Protein 3, Src-1-Interacting Protein, Interacting Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kank2, Ankrd25, Kiaa1518, Mxra3, Sip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 2
R_factor 0.177 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.061 65.568 28.758 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4hbd.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 4HBD
  • CSU: Contacts of Structural Units for 4HBD
  • Structure Factors (5715 Kb)
  • Retrieve 4HBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HBD from S2C, [Save to disk]
  • Re-refined 4hbd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HBD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HBD, from MSDmotif at EBI
  • Fold representative 4hbd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hbd_A] [4hbd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HBD: [ANK ] by SMART
  • Other resources with information on 4HBD
  • Community annotation for 4HBD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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