4HC1 Crystal structure of a loop deleted mutant of human MAdCAM-1 D1D2 complexed with Fab 10G3 date 2012-09-28
authors Springer, T., Yu, Y., Zhu, J.
compound source
symmetry
R_factor
R_Free 0.2529
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.87
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (579 Kb) [Save to disk]
  • Biological Unit Coordinates (4hc1.pdb1.gz) 285 Kb
  • Biological Unit Coordinates (4hc1.pdb2.gz) 288 Kb
  • LPC: Ligand-Protein Contacts for 4HC1
  • CSU: Contacts of Structural Units for 4HC1
  • Structure Factors (483 Kb)
  • Retrieve 4HC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HC1 from S2C, [Save to disk]
  • Re-refined 4hc1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HC1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HC1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f4hc1, region C:220-333 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hc1_M] [4hc1_H] [4hc1_A] [4hc1_B] [4hc1_L] [4hc1] [4hc1_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HC1: [IG] [IG_like] [IGv ] by SMART
  • Other resources with information on 4HC1
  • Community annotation for 4HC1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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