4HCR Immune System date Oct 01, 2012
title Crystal Structure Of Human Madcam-1 D1d2 Complexed With Fab
authors T.Springer, Y.Yu, J.Zhu
compound source
Molecule: Pf-547659 Heavy Chain
Chain: H, M
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Pf-547659 Light Chain
Chain: L, N
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Mucosal Addressin Cell Adhesion Molecule 1
Chain: A, B
Synonym: Madcam-1, Hmadcam-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Madcam1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_strain: Hek 293 Gnti(-)
Expression_system_organ: Kidney
symmetry Space Group: P 1 21 1
R_factor 0.153 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.940 112.260 157.920 90.00 89.95 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (398 Kb) [Save to disk]
  • Biological Unit Coordinates (4hcr.pdb1.gz) 199 Kb
  • Biological Unit Coordinates (4hcr.pdb2.gz) 198 Kb
  • CSU: Contacts of Structural Units for 4HCR
  • Structure Factors (462 Kb)
  • Retrieve 4HCR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HCR from S2C, [Save to disk]
  • Re-refined 4hcr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HCR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HCR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HCR, from MSDmotif at EBI
  • Fold representative 4hcr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hcr_L] [4hcr_M] [4hcr_B] [4hcr] [4hcr_A] [4hcr_H] [4hcr_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HCR: [IG] [IG_like] [IGv ] by SMART
  • Other resources with information on 4HCR
  • Community annotation for 4HCR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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