4HDA Crystal structure of human Sirt5 in complex with Fluor-de-Lys peptide and resveratrol date 2012-10-02
authors Gertz, M., Steegborn, C.
compound source
symmetry
R_factor
R_Free 0.2521
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand FDL, STL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA molecular mechanism for direct sirtuin activation by resveratrol., Gertz M, Nguyen GT, Fischer F, Suenkel B, Schlicker C, Franzel B, Tomaschewski J, Aladini F, Becker C, Wolters D, Steegborn C, PLoS One. 2012;7(11):e49761. doi: 10.1371/journal.pone.0049761. Epub 2012 Nov 21. PMID:23185430
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4hda.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (4hda.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 4HDA
  • CSU: Contacts of Structural Units for 4HDA
  • Structure Factors (170 Kb)
  • Retrieve 4HDA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HDA from S2C, [Save to disk]
  • Re-refined 4hda structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HDA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HDA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HDA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hda_A] [4hda] [4hda_F] [4hda_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HDA
  • Community annotation for 4HDA at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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