4HDO Crystal structure of the binary Complex of KRIT1 bound to the Rap1 GTPase date 2012-10-02
authors Gingras, A.R.
compound source
symmetry
R_factor
R_Free 0.23142
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.67
ligand GNP, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe Structure of the Ternary Complex of Krev Interaction Trapped 1 (KRIT1) bound to both the Rap1 GTPase and the Heart of Glass (HEG1) cytoplasmic tail., Gingras AR, Puzon-McLaughlin W, Ginsberg MH, J Biol Chem. 2013 Jun 27. PMID:23814056
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4hdo.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 4HDO
  • CSU: Contacts of Structural Units for 4HDO
  • Structure Factors (797 Kb)
  • Retrieve 4HDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HDO from S2C, [Save to disk]
  • Re-refined 4hdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HDO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HDO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hdo] [4hdo_A] [4hdo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HDO: [B41] [RAS ] by SMART
  • Other resources with information on 4HDO
  • Community annotation for 4HDO at PDBWiki (http://pdbwiki.org)

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