4HDU Crystal structure of S. pombe ATL1 in complex with damaged DNA containing 2-aminopurine date 2012-10-02
authors Tubbs, J.L., Tainer, J.A.
compound source
symmetry
R_factor
R_Free 0.2669
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand 2PR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAlkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-pi interactions., Wilkinson OJ, Latypov V, Tubbs JL, Millington CL, Morita R, Blackburn H, Marriott A, McGown G, Thorncroft M, Watson AJ, Connolly BA, Grasby JA, Masui R, Hunter CA, Tainer JA, Margison GP, Williams DM, Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18755-60. doi:, 10.1073/pnas.1209451109. Epub 2012 Oct 29. PMID:23112169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4hdu.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 4HDU
  • CSU: Contacts of Structural Units for 4HDU
  • Structure Factors (38 Kb)
  • Retrieve 4HDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HDU from S2C, [Save to disk]
  • Re-refined 4hdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HDU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HDU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hdu_B] [4hdu] [4hdu_A] [4hdu_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HDU
  • Community annotation for 4HDU at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science