4HFG Protein Binding date Oct 05, 2012
title Cid Of Human Rprd1b
authors Z.Ni, C.Xu, W.Tempel, M.El Bakkouri, P.Loppnau, X.Guo, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, J.F.Greenblatt, Structural Consortium (Sgc)
compound source
Molecule: Regulation Of Nuclear Pre-Mrna Domain-Containing 1b;
Chain: A, B
Synonym: Cell Cycle-Related And Expression-Elevated Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rprd1b, C20orf77, Crept
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet15 Mhl
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.083 48.492 112.347 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4, UNX enzyme
note 4HFG supersedes 4FLD
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4hfg.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4HFG
  • CSU: Contacts of Structural Units for 4HFG
  • Structure Factors (1135 Kb)
  • Retrieve 4HFG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HFG from S2C, [Save to disk]
  • Re-refined 4hfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HFG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HFG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HFG, from MSDmotif at EBI
  • Fold representative 4hfg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hfg] [4hfg_B] [4hfg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HFG: [RPR ] by SMART
  • Other resources with information on 4HFG
  • Community annotation for 4HFG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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