4HFO Biogenic amine-binding protein selenomethionine derivative date
authors Andersen, J.F., Xu, X., Chang, B., Mans, B.J., Ribeiro, J.M.
compound source
symmetry
R_factor
R_Free 0.3487
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, K, B, C, D, I, L


Primary referenceStructure and ligand-binding properties of the biogenic amine-binding protein from the saliva of a blood-feeding insect vector of Trypanosoma cruzi., Xu X, Chang BW, Mans BJ, Ribeiro JM, Andersen JF, Acta Crystallogr D Biol Crystallogr. 2013 Jan;69(Pt 1):105-13. doi:, 10.1107/S0907444912043326. Epub 2012 Dec 20. PMID:23275168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (497 Kb) [Save to disk]
  • Biological Unit Coordinates (4hfo.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (4hfo.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (4hfo.pdb3.gz) 68 Kb
  • Biological Unit Coordinates (4hfo.pdb4.gz) 68 Kb
  • Biological Unit Coordinates (4hfo.pdb5.gz) 62 Kb
  • Biological Unit Coordinates (4hfo.pdb6.gz) 54 Kb
  • Biological Unit Coordinates (4hfo.pdb7.gz) 68 Kb
  • Biological Unit Coordinates (4hfo.pdb8.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 4HFO
  • CSU: Contacts of Structural Units for 4HFO
  • Structure Factors (1039 Kb)
  • Retrieve 4HFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HFO from S2C, [Save to disk]
  • Re-refined 4hfo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HFO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HFO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hfo] [4hfo_B] [4hfo_L] [4hfo_D] [4hfo_I] [4hfo_J] [4hfo_C] [4hfo_K] [4hfo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HFO
  • Community annotation for 4HFO at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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