4HFP Structure of thrombin mutant S195a bound to the active site inhibitor argatroban date 2012-10-05
authors Pozzi, N., Chen, Z., Zapata, F., Lin, W., Barranco-Medina, S., Pelc, L.A., Cera, E.Di.
compound source
symmetry
R_factor
R_Free 0.23805
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 15U, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceAutoactivation of thrombin precursors., Pozzi N, Chen Z, Zapata F, Niu W, Barranco-Medina S, Pelc LA, Di Cera E, J Biol Chem. 2013 Apr 19;288(16):11601-10. doi: 10.1074/jbc.M113.451542. Epub, 2013 Mar 6. PMID:23467412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4hfp.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (4hfp.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 4HFP
  • CSU: Contacts of Structural Units for 4HFP
  • Structure Factors (325 Kb)
  • Retrieve 4HFP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HFP from S2C, [Save to disk]
  • Re-refined 4hfp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HFP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HFP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HFP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hfp_D] [4hfp_C] [4hfp] [4hfp_B] [4hfp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HFP: [Tryp_SPc ] by SMART
    • Other resources with information on 4HFP
  • Community annotation for 4HFP at PDBWiki (http://pdbwiki.org)

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