4HI0 Crystal Structure of Helicobacter pylori Urease Accessory Protein UreF/H/G complex date 2012-10-11
authors Fong, Y.H., Chen, Y.W., Wong, K.B.
compound source
symmetry
R_factor
R_Free 0.2421
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand GDP enzyme
Gene HP ; HP ; HP
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


F, E


Primary referenceStructure of UreG/UreF/UreH complex reveals how urease accessory proteins facilitate maturation of Helicobacter pylori urease., Fong YH, Wong HC, Yuen MH, Lau PH, Chen YW, Wong KB, PLoS Biol. 2013 Oct;11(10):e1001678. doi: 10.1371/journal.pbio.1001678. Epub 2013, Oct 8. PMID:24115911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (4hi0.pdb1.gz) 455 Kb
  • LPC: Ligand-Protein Contacts for 4HI0
  • CSU: Contacts of Structural Units for 4HI0
  • Structure Factors (447 Kb)
  • Retrieve 4HI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HI0 from S2C, [Save to disk]
  • Re-refined 4hi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HI0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HI0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hi0] [4hi0_C] [4hi0_F] [4hi0_B] [4hi0_A] [4hi0_D] [4hi0_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HI0
  • Community annotation for 4HI0 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science