4HIG Dna date Oct 11, 2012
title Ultrahigh-Resolution Crystal Structure Of Z-Dna In Complex W Ion.
authors P.Drozdzal, M.Gilski, R.Kierzek, L.Lomozik, M.Jaskolski
compound source
Molecule: Dna (5'-D(Cpgpcpgpcpg)-3')
Chain: A, B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthetic Construct
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.732 31.436 43.935 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.75 Å
ligand MN, SPK enzyme
Primary referenceUltrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions., Drozdzal P, Gilski M, Kierzek R, Lomozik L, Jaskolski M, Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1180-90. doi:, 10.1107/S0907444913007798. Epub 2013 May 16. PMID:23695262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (4hig.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 4HIG
  • CSU: Contacts of Structural Units for 4HIG
  • Structure Factors (515 Kb)
  • Retrieve 4HIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HIG from S2C, [Save to disk]
  • Re-refined 4hig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HIG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HIG, from MSDmotif at EBI
  • Fold representative 4hig from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hig] [4hig_B] [4hig_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HIG
  • Community annotation for 4HIG at PDBWiki (http://pdbwiki.org)

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