4HMY	Protein Transport	date	Oct 18, 2012
title	Structural Basis For Recruitment And Activation Of The Ap-1 Adaptor Complex By Arf1
authors	X.Ren, G.G.Farias, B.J.Canagarajah, J.S.Bonifacino, J.H.Hurley
compound		source
Molecule: Ap-1 Complex Subunit Gamma-1 Chain: A Fragment: Unp Residues 1-595 Synonym: Adapter-Related Protein Complex 1 Subunit Gamma-1, Protein Complex Ap-1 Subunit Gamma-1, Clathrin Assembly Pro Complex 1 Gamma-1 Large Chain, Gamma-Adaptin, Gamma1-Adapti Adaptor Ha1ap1 Adaptin Subunit Gamma-1; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Adtg, Ap1g1, Clapg1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst44
Molecule: Ap-1 Complex Subunit Beta-1 Chain: B Fragment: Unp Residues 1-584 Synonym: Adapter-Related Protein Complex 1 Subunit Beta-1, Protein Complex Ap-1 Subunit Beta-1, Beta-1-Adaptin, Beta-A Clathrin Assembly Protein Complex 1 Beta Large Chain, Golgi Ha1ap1 Adaptin Beta Subunit; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adtb1, Ap1b1, Bam22, Clapb2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst44
Molecule: Ap-1 Complex Subunit Mu-1 Chain: M Synonym: Ap-Mu Chain Family Member Mu1a, Adaptor Protein Co Mu-1 Subunit, Adaptor-Related Protein Complex 1 Mu-1 Subuni Clathrin Assembly Protein Complex 1 Medium Chain 1, Clathri Assembly Protein Ap47, Clathrin Coat-Associated Protein Ap4 Adaptor Ha1ap1 Adaptin Mu-1 Subunit, Mu-Adaptin 1, Mu1a-Ad Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap1m1, Cltnm Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst44
Molecule: Ap-1 Complex Subunit Sigma-3 Chain: S Synonym: Adapter-Related Protein Complex 1 Sigma-1c Subunit Protein Complex Ap-1 Sigma-1c Subunit, Clathrin Assembly Pr Complex 1 Sigma-1c Small Chain, Golgi Adaptor Ha1ap1 Adapt 1c Subunit, Sigma 1c Subunit Of Ap-1 Clathrin, Sigma-Adapti Sigma1c-Adaptin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ap1s3 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst44
Molecule: Adp-Ribosylation Factor 1 Chain: C Fragment: Unp Residues 17-181 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Arf1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis2
symmetry	Space Group: P 64	R_factor 0.200 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 267.500 267.500 191.400 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	7.00 Å
ligand	GTP, MG	enzyme
Gene Ontology	Chain Function Process Component A B C phospholipase D activator ac... M S
Primary reference	Structural Basis for Recruitment and Activation of the AP-1 Clathrin Adaptor Complex by Arf1., Ren X, Farias GG, Canagarajah BJ, Bonifacino JS, Hurley JH, Cell. 2013 Feb 14;152(4):755-67. doi: 10.1016/j.cell.2012.12.042. PMID:23415225

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk] Biological Unit Coordinates (4hmy.pdb1.gz) 253 Kb LPC: Ligand-Protein Contacts for 4HMY CSU: Contacts of Structural Units for 4HMY Structure Factors (122 Kb) Retrieve 4HMY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4HMY from S2C, [Save to disk] Re-refined 4hmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4HMY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4HMY

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4HMY, from MSDmotif at EBI Fold representative 4hmy from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4hmy_A] [4hmy] [4hmy_C] [4hmy_S] [4hmy_B] [4hmy_M] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4HMY: [ARF ] by SMART

Other resources with information on 4HMY

Community annotation for 4HMY at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---