4HMY Protein Transport date Oct 18, 2012
title Structural Basis For Recruitment And Activation Of The Ap-1 Adaptor Complex By Arf1
authors X.Ren, G.G.Farias, B.J.Canagarajah, J.S.Bonifacino, J.H.Hurley
compound source
Molecule: Ap-1 Complex Subunit Gamma-1
Chain: A
Fragment: Unp Residues 1-595
Synonym: Adapter-Related Protein Complex 1 Subunit Gamma-1, Protein Complex Ap-1 Subunit Gamma-1, Clathrin Assembly Pro Complex 1 Gamma-1 Large Chain, Gamma-Adaptin, Gamma1-Adapti Adaptor Ha1ap1 Adaptin Subunit Gamma-1;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Adtg, Ap1g1, Clapg1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst44

Molecule: Ap-1 Complex Subunit Beta-1
Chain: B
Fragment: Unp Residues 1-584
Synonym: Adapter-Related Protein Complex 1 Subunit Beta-1, Protein Complex Ap-1 Subunit Beta-1, Beta-1-Adaptin, Beta-A Clathrin Assembly Protein Complex 1 Beta Large Chain, Golgi Ha1ap1 Adaptin Beta Subunit;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adtb1, Ap1b1, Bam22, Clapb2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst44

Molecule: Ap-1 Complex Subunit Mu-1
Chain: M
Synonym: Ap-Mu Chain Family Member Mu1a, Adaptor Protein Co Mu-1 Subunit, Adaptor-Related Protein Complex 1 Mu-1 Subuni Clathrin Assembly Protein Complex 1 Medium Chain 1, Clathri Assembly Protein Ap47, Clathrin Coat-Associated Protein Ap4 Adaptor Ha1ap1 Adaptin Mu-1 Subunit, Mu-Adaptin 1, Mu1a-Ad
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ap1m1, Cltnm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst44

Molecule: Ap-1 Complex Subunit Sigma-3
Chain: S
Synonym: Adapter-Related Protein Complex 1 Sigma-1c Subunit Protein Complex Ap-1 Sigma-1c Subunit, Clathrin Assembly Pr Complex 1 Sigma-1c Small Chain, Golgi Adaptor Ha1ap1 Adapt 1c Subunit, Sigma 1c Subunit Of Ap-1 Clathrin, Sigma-Adapti Sigma1c-Adaptin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ap1s3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst44

Molecule: Adp-Ribosylation Factor 1
Chain: C
Fragment: Unp Residues 17-181
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arf1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis2
symmetry Space Group: P 64
R_factor 0.200 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
267.500 267.500 191.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 7.00 Å
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • phospholipase D activator ac...


  • M


    S


    Primary referenceStructural Basis for Recruitment and Activation of the AP-1 Clathrin Adaptor Complex by Arf1., Ren X, Farias GG, Canagarajah BJ, Bonifacino JS, Hurley JH, Cell. 2013 Feb 14;152(4):755-67. doi: 10.1016/j.cell.2012.12.042. PMID:23415225
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (4hmy.pdb1.gz) 253 Kb
  • LPC: Ligand-Protein Contacts for 4HMY
  • CSU: Contacts of Structural Units for 4HMY
  • Structure Factors (122 Kb)
  • Retrieve 4HMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HMY from S2C, [Save to disk]
  • Re-refined 4hmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HMY, from MSDmotif at EBI
  • Fold representative 4hmy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hmy_A] [4hmy] [4hmy_C] [4hmy_S] [4hmy_B] [4hmy_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HMY: [ARF ] by SMART
  • Other resources with information on 4HMY
  • Community annotation for 4HMY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science