4HN5 Transcription Dna date Oct 18, 2012
title Gr Dna Binding Domain - Tslp Ngre Complex
authors W.H.Hudson, C.E.Youn, E.A.Ortlund
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Glucocorticoid Receptor Dna Binding Domain
Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21

Molecule: Dna (5'-D(Cpgpcpcptpcpcpgpgpgpapgpap 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Apgpcptpcptpcpcpcpgpgpapgp 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.235
length a length b length c angle alpha angle beta angle gamma
39.349 96.568 103.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ZN enzyme
A, B

Primary referenceThe structural basis of direct glucocorticoid-mediated transrepression., Hudson WH, Youn C, Ortlund EA, Nat Struct Mol Biol. 2012 Dec 9. doi: 10.1038/nsmb.2456. PMID:23222642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4hn5.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4HN5
  • CSU: Contacts of Structural Units for 4HN5
  • Structure Factors (410 Kb)
  • Retrieve 4HN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HN5 from S2C, [Save to disk]
  • Re-refined 4hn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HN5, from MSDmotif at EBI
  • Fold representative 4hn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hn5_C] [4hn5_A] [4hn5] [4hn5_B] [4hn5_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HN5: [ZnF_C4 ] by SMART
  • Other resources with information on 4HN5
  • Community annotation for 4HN5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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