4HNJ Apoptosis Protein Binding date Oct 19, 2012
title Crystallographic Structure Of Bcl-Xl Domain-Swapped Dimer In With Puma Bh3 Peptide At 2.9a Resolution
authors J.C.Fisher, M.K.Yun, S.W.White
compound source
Molecule: Bcl-2-Like Protein 1
Chain: A, B
Synonym: Bcl2-L-1, Apoptosis Regulator Bcl-X
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2l1, Bcl2l, Bclx
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28

Molecule: Bcl-2-Binding Component 3
Chain: C
Fragment: Bh3 Domain Peptide
Synonym: Jfy-1, P53 Up-Regulated Modulator Of Apoptosis
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 42 2 2
R_factor 0.206 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.829 94.829 111.542 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of prote...

  • C


    Primary referencePUMA binding induces partial unfolding within BCL-xL to disrupt p53 binding and promote apoptosis., Follis AV, Chipuk JE, Fisher JC, Yun MK, Grace CR, Nourse A, Baran K, Ou L, Min L, White SW, Green DR, Kriwacki RW, Nat Chem Biol. 2013 Jan 20. doi: 10.1038/nchembio.1166. PMID:23340338
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4hnj.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 4HNJ
  • Structure Factors (84 Kb)
  • Retrieve 4HNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HNJ from S2C, [Save to disk]
  • Re-refined 4hnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HNJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HNJ, from MSDmotif at EBI
  • Fold representative 4hnj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hnj_A] [4hnj_B] [4hnj] [4hnj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HNJ: [BCL] [BH4 ] by SMART
  • Other resources with information on 4HNJ
  • Community annotation for 4HNJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science