4HP3 Dna Binding Protein Dna date Oct 23, 2012
title Crystal Structure Of Tet3 In Complex With A Cpg Dsdna
authors X.Chao, W.Tempel, C.Bian, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Structural Genomics Consortium (Sgc)
compound source
Molecule: Dna (5'-D(Gpcpcpapapcpgptptpgpgpc)-3'
Chain: A, B
Engineered: Yes
Synthetic: Yes

Molecule: Loc100036628 Protein
Chain: C
Engineered: Yes

Organism_scientific: Xenopus (Silurana) Tropicalis
Organism_common: Western Clawed Frog
Organism_taxid: 8364
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.892 39.455 54.134 90.00 99.92 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceTet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development., Xu Y, Xu C, Kato A, Tempel W, Abreu JG, Bian C, Hu Y, Hu D, Zhao B, Cerovina T, Diao J, Wu F, He HH, Cui Q, Clark E, Ma C, Barbara A, Veenstra GJ, Xu G, Kaiser UB, Liu XS, Sugrue SP, He X, Min J, Kato Y, Shi YG, Cell. 2012 Dec 7;151(6):1200-13. doi: 10.1016/j.cell.2012.11.014. PMID:23217707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4hp3.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4HP3
  • CSU: Contacts of Structural Units for 4HP3
  • Structure Factors (465 Kb)
  • Retrieve 4HP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HP3 from S2C, [Save to disk]
  • Re-refined 4hp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HP3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HP3, from MSDmotif at EBI
  • Fold representative 4hp3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hp3] [4hp3_A] [4hp3_C] [4hp3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HP3
  • Community annotation for 4HP3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science