4HQ8 Crystal structure of a green-to-red photoconvertible DRONPA, pcDRONPA in the green-on-state date 2012-10-25
authors Bich, N.Nguyen., Meervelt, L.Van.
compound source
symmetry
R_factor
R_Free 0.2351
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand CR8, EPE, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceGreen-to-Red Photoconvertible Dronpa Mutant for Multimodal Super-resolution Fluorescence Microscopy., Moeyaert B, Nguyen Bich N, De Zitter E, Rocha S, Clays K, Mizuno H, van Meervelt L, Hofkens J, Dedecker P, ACS Nano. 2014 Jan 21. PMID:24410188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (4hq8.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (4hq8.pdb2.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 4HQ8
  • CSU: Contacts of Structural Units for 4HQ8
  • Structure Factors (4121 Kb)
  • Retrieve 4HQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HQ8 from S2C, [Save to disk]
  • Re-refined 4hq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HQ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HQ8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hq8_C] [4hq8_E] [4hq8_B] [4hq8_F] [4hq8_D] [4hq8_A] [4hq8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HQ8
  • Community annotation for 4HQ8 at PDBWiki (http://pdbwiki.org)

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