4HRF Hydrolase date Oct 27, 2012
title Atomic Structure Of Dusp26
authors R.K.Lokareddy, A.Bhardwaj, G.Cingolani
compound source
Molecule: Dual Specificity Protein Phosphatase 26
Chain: A, B, C, D
Synonym: Dual Specificity Phosphatase Skrp3, Low-Molecular- Specificity Phosphatase 4, Dsp-4, Ldp-4, Mitogen-Activated Kinase Phosphatase 8, Map Kinase Phosphatase 8, Mkp-8, Nove Amplified Gene In Thyroid Anaplastic Cancer;
Ec: 3.1.3.16, 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dusp24, Dusp26, Ldp4, Mkp8, Nata1, Skrp3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.972 82.260 91.678 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand
enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAtomic Structure of Dual-Specificity Phosphatase 26, a Novel p53 Phosphatase., Lokareddy RK, Bhardwaj A, Cingolani G, Biochemistry. 2013 Jan 18. PMID:23298255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (4hrf.pdb1.gz) 222 Kb
  • Biological Unit Coordinates (4hrf.pdb2.gz) 112 Kb
  • Biological Unit Coordinates (4hrf.pdb3.gz) 112 Kb
  • CSU: Contacts of Structural Units for 4HRF
  • Structure Factors (966 Kb)
  • Retrieve 4HRF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HRF from S2C, [Save to disk]
  • Re-refined 4hrf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HRF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HRF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HRF, from MSDmotif at EBI
  • Fold representative 4hrf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hrf_C] [4hrf_B] [4hrf_A] [4hrf] [4hrf_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HRF: [DSPc ] by SMART
  • Other resources with information on 4HRF
  • Community annotation for 4HRF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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