4HTX Crystal structure of PDE2 catalytic domain in complex with BAY60-7550 date
authors Zhu, J., Huang, Q.
compound source
symmetry
R_factor
R_Free 0.2266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 19F, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceX-ray Crystal Structure of Phosphodiesterase 2 in Complex with a Highly Selective, Nanomolar Inhibitor Reveals a Binding-Induced Pocket Important for Selectivity., Zhu J, Yang Q, Dai D, Huang Q, J Am Chem Soc. 2013 Aug 14;135(32):11708-11. doi: 10.1021/ja404449g. Epub 2013, Aug 2. PMID:23899287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk]
  • Biological Unit Coordinates (4htx.pdb1.gz) 224 Kb
  • Biological Unit Coordinates (4htx.pdb2.gz) 225 Kb
  • LPC: Ligand-Protein Contacts for 4HTX
  • CSU: Contacts of Structural Units for 4HTX
  • Structure Factors (1876 Kb)
  • Retrieve 4HTX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HTX from S2C, [Save to disk]
  • Re-refined 4htx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HTX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HTX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HTX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4htx_D] [4htx_B] [4htx] [4htx_A] [4htx_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HTX: [HDc ] by SMART
    • Other resources with information on 4HTX
  • Community annotation for 4HTX at PDBWiki (http://pdbwiki.org)

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