4HUF Structure of 5-chlorouracil modified A:U base pair date
authors Patra, A., Egli, M.
compound source
symmetry
R_factor
R_Free 0.2277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.69
ligand EDO, GOL, MG, UCL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure, stability and function of 5-chlorouracil modified A:U and G:U base pairs., Patra A, Harp J, Pallan PS, Zhao L, Abramov M, Herdewijn P, Egli M, Nucleic Acids Res. 2012 Dec 28. PMID:23275540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4huf.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (4huf.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4HUF
  • CSU: Contacts of Structural Units for 4HUF
  • Structure Factors (1648 Kb)
  • Retrieve 4HUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HUF from S2C, [Save to disk]
  • Re-refined 4huf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HUF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HUF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4huf] [4huf_C] [4huf_A] [4huf_F] [4huf_B] [4huf_D] [4huf_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HUF
  • Community annotation for 4HUF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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