4HVY A thermostable variant of human NUDT18 NUDIX domain obtained by Hot Colony Filtration date 2012-11-07
authors Asial, I., Cheng, Y.X., Engman, H., Wu, B., Dollhopf, M., Nordlund, P., Cornvik, T.
compound source
symmetry
R_factor
R_Free 0.2105
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.46
ligand GOL, MG, NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering protein thermostability using a generic activity-independent biophysical screen inside the cell., Asial I, Cheng YX, Engman H, Dollhopf M, Wu B, Nordlund P, Cornvik T, Nat Commun. 2013 Dec 19;4:2901. doi: 10.1038/ncomms3901. PMID:24352381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4hvy.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4hvy.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 4HVY
  • CSU: Contacts of Structural Units for 4HVY
  • Structure Factors (451 Kb)
  • Retrieve 4HVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HVY from S2C, [Save to disk]
  • Re-refined 4hvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HVY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HVY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hvy] [4hvy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HVY
  • Community annotation for 4HVY at PDBWiki (http://pdbwiki.org)

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