4HXG Hydrolase date Nov 09, 2012
title Pyrococcus Horikoshii Acylaminoacyl Peptidase (Orthorhombic Form)
authors A.Kiss-Szeman, D.K.Menyhard, E.Tichy-Racs, B.Hornung, K.Radi, Z.S K.Domokos, I.Szamosi, G.Naray-Szabo, L.Polgar, V.Harmat
compound source
Molecule: Putative Uncharacterized Protein Ph0594
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Ec: 3.4.19.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Atcc 700860 Dsm 12428 Jcm 9974 Nbrc 100139
Gene: Ph0594
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.310 183.800 275.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CL, HEZ, MG enzyme Hydrolase E.C.3.4.19.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceA self-compartmentalizing hexamer serine protease from Pyrococcus horikoshii - substrate selection achieved through multimerization., Menyhard DK, Kiss-Szeman A, Tichy-Racs E, Hornung B, Radi K, Szeltner Z, Domokos K, Szamosi I, Naray-Szabo G, Polgar L, Harmat V, J Biol Chem. 2013 Apr 30. PMID:23632025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2433 Kb) [Save to disk]
  • Biological Unit Coordinates (4hxg.pdb1.gz) 1230 Kb
  • Biological Unit Coordinates (4hxg.pdb2.gz) 1202 Kb
  • LPC: Ligand-Protein Contacts for 4HXG
  • CSU: Contacts of Structural Units for 4HXG
  • Structure Factors (3479 Kb)
  • Retrieve 4HXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HXG from S2C, [Save to disk]
  • Re-refined 4hxg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HXG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HXG, from MSDmotif at EBI
  • Fold representative 4hxg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hxg_J] [4hxg_L] [4hxg_A] [4hxg_D] [4hxg] [4hxg_H] [4hxg_G] [4hxg_C] [4hxg_F] [4hxg_K] [4hxg_I] [4hxg_E] [4hxg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HXG
  • Community annotation for 4HXG at PDBWiki (http://pdbwiki.org)

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