4HYP	Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.	date	2012-11-13
authors	Bensen, D.C., Creighton, C.J., Tari, L.W.
compound		source
symmetry		R_factor R_Free 0.29406
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.60
ligand	1A1, MG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity., Tari LW, Trzoss M, Bensen DC, Li X, Chen Z, Lam T, Zhang J, Creighton CJ, Cunningham ML, Kwan B, Stidham M, Shaw KJ, Lightstone FC, Wong SE, Nguyen TB, Nix J, Finn J, Bioorg Med Chem Lett. 2012 Dec 5. pii: S0960-894X(12)01475-8. doi:, 10.1016/j.bmcl.2012.11.032. PMID:23352267

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (4hyp.pdb1.gz) 33 Kb Biological Unit Coordinates (4hyp.pdb2.gz) 34 Kb Biological Unit Coordinates (4hyp.pdb3.gz) 34 Kb Biological Unit Coordinates (4hyp.pdb4.gz) 34 Kb Biological Unit Coordinates (4hyp.pdb5.gz) 64 Kb Biological Unit Coordinates (4hyp.pdb6.gz) 65 Kb LPC: Ligand-Protein Contacts for 4HYP CSU: Contacts of Structural Units for 4HYP Structure Factors (343 Kb) Retrieve 4HYP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4HYP from S2C, [Save to disk] Re-refined 4hyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4HYP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4HYP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4HYP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4hyp_B] [4hyp] [4hyp_D] [4hyp_C] [4hyp_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4HYP: [HATPase_c] [TOP2c ] by SMART

Other resources with information on 4HYP

Community annotation for 4HYP at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---