4HYR Lyase date Nov 14, 2012
title Structure Of Putative Glucarate Dehydratase From Acidaminoco D21 With Unusual Static Disorder
authors R.P.Hegde, R.Toro, S.K.Burley, S.C.Almo, U.A.Ramagopal, New York Structural Genomics Research Consortium (Nysgrc)
compound source
Molecule: Glucarate Dehydratase
Chain: A, B
Engineered: Yes
Organism_scientific: Acidaminococcus Sp. D21
Organism_taxid: 563191
Gene: Acdg_00756
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Bc-Psgx4(Bc)
symmetry Space Group: P 41 21 2
R_factor 0.163 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.916 88.916 236.218 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand CL, EDO, GOL, MSE enzyme
Gene ACDG
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (323 Kb) [Save to disk]
  • Biological Unit Coordinates (4hyr.pdb1.gz) 610 Kb
  • Biological Unit Coordinates (4hyr.pdb2.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 4HYR
  • CSU: Contacts of Structural Units for 4HYR
  • Structure Factors (1219 Kb)
  • Retrieve 4HYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HYR from S2C, [Save to disk]
  • Re-refined 4hyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HYR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HYR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hyr] [4hyr_B] [4hyr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HYR: [MR_MLE ] by SMART
  • Other resources with information on 4HYR
  • Community annotation for 4HYR at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science