4HYY Filament of octameric rings of DMC1 recombinase from Homo sapiens date 2012-11-14
authors Du, L., Luo, Y.
compound source
symmetry
R_factor
R_Free 0.24615
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of a filament of stacked octamers of human DMC1 recombinase., Du L, Luo Y, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):382-6. doi:, 10.1107/S1744309113005678. Epub 2013 Mar 28. PMID:23545642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (4hyy.pdb1.gz) 627 Kb
  • Biological Unit Coordinates (4hyy.pdb2.gz) 630 Kb
  • Biological Unit Coordinates (4hyy.pdb3.gz) 1251 Kb
  • CSU: Contacts of Structural Units for 4HYY
  • Structure Factors (616 Kb)
  • Retrieve 4HYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HYY from S2C, [Save to disk]
  • Re-refined 4hyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HYY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HYY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hyy_B] [4hyy_C] [4hyy_D] [4hyy] [4hyy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HYY: [AAA ] by SMART
  • Other resources with information on 4HYY
  • Community annotation for 4HYY at PDBWiki (http://pdbwiki.org)

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