4I0F Design and Synthesis of Thiophene Dihydroisoquinolins as Novel BACE-1 Inhibitors date 2012-11-16
authors Yao, N., Brecht, E.
compound source
symmetry
R_factor
R_Free 0.26560
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 1BF, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of thiophene dihydroisoquinolines as novel BACE1 inhibitors., Xu YZ, Yuan S, Bowers S, Hom RK, Chan W, Sham HL, Zhu YL, Beroza P, Pan H, Brecht E, Yao N, Lougheed J, Yan J, Tam D, Ren Z, Ruslim L, Bova MP, Artis DR, Bioorg Med Chem Lett. 2013 May 15;23(10):3075-80. doi:, 10.1016/j.bmcl.2013.03.009. Epub 2013 Mar 21. PMID:23570791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (4i0f.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (4i0f.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 4I0F
  • CSU: Contacts of Structural Units for 4I0F
  • Structure Factors (534 Kb)
  • Retrieve 4I0F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I0F from S2C, [Save to disk]
  • Re-refined 4i0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I0F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I0F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I0F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i0f] [4i0f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4I0F
  • Community annotation for 4I0F at PDBWiki (http://pdbwiki.org)

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