4I15	Crystal structure of TbrPDEB1	date	2012-11-20
authors	Wang, H., Ke, H.
compound		source
symmetry		R_factor R_Free 0.2233
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.65
ligand	MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of Novel Trypanosoma brucei Phosphodiesterase B1 Inhibitors by Virtual Screening against the Unliganded TbrPDEB1 Crystal Structure., Jansen C, Wang H, Kooistra AJ, de Graaf C, Orrling KM, Tenor H, Seebeck T, Bailey D, de Esch IJ, Ke H, Leurs R, J Med Chem. 2013 Mar 1. PMID:23409953

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (4i15.pdb1.gz) 114 Kb LPC: Ligand-Protein Contacts for 4I15 CSU: Contacts of Structural Units for 4I15 Structure Factors (1096 Kb) Retrieve 4I15 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4I15 from S2C, [Save to disk] Re-refined 4i15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4I15 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4I15

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4I15, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4i15] [4i15_A] [4i15_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4I15: [HDc ] by SMART

Other resources with information on 4I15

Community annotation for 4I15 at PDBWiki (http://pdbwiki.org)

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